3. Gene annotation of a genome [slides]
Assignment: read one of papers listed at the end of slides and write a one-page summary, due Sept. 8, 2011.
4. Protein structure prediction [slides]
Assignment: review the following paper and write a one-page summary (due Sept. 9, 2011).
Y. Zhang. Protein structure prediction: when is it
useful? Current Opinion in Structural Biology,
vol. 19, 145-155, 2009.
6. Protein interaction prediction [slides]
Reading (select one to review): select one paper mentioned in the slides to review and write a one-page summary.
7. Biological pathways and networks [slides]
Assignment: review the network paper mentioned in the lectur. The assignment is due Sept. 21 (one day later than originally planned).
Develop a software pipeline to assemble and annotate a bacteria genome in six steps (assembly, gene prediction, protein structure prediction, protein function prediction, protein interaction predition, and reconstruction of biological pathways and networks).